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'''MediaWiki wurde erfolgreich installiert.'''
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= Welcome to the HPC Cluster ''BioCrunch'' Wiki =
 
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Hilfe zur Benutzung und Konfiguration der Wiki-Software findest du im [http://meta.wikimedia.org/wiki/Help:Contents Benutzerhandbuch].
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Welcome to the High Performance Computing Cluster BIOcrunch Wiki at ZSM Munich.
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== News ==
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The cluster was upgraded in June 2013. It is up and running at cluster.zsm-intra.net. See the ClusterUpgradeEmail
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[[File:biochrunch.PNG]]
  
 
== Introduction ==
 
== Introduction ==
  
The BIOCrunch cluster at ZSM is a centrally administered cluster composed of compute nodes owned by ZSM. The cluster runs 64-bit linux and is accessible at cluster.zsm-intra.net to users with accounts.
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The BioCrunch cluster is a centrally administered cluster consisting of several nodes hosted by the [http://www.zsm.mwn.de Zoologische Staatssammlung] in Munich, Germany.
There is an BIOCrunch Advisory Committee that oversees the cluster. Day-to-day management of the cluster falls to Gerhard Recher.
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Send emails to administrator@zsm.mwn.de if you have a technical question or problem that cannot be addressed by the documentation below.
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If you are new to the cluster, please check scheduler and resource manager tutorials and go through FAQs. Thanks.
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== FAQs ==
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The cluster [[BIOcrunch:About|hosts several programms ]] that are dedicated to the inference of phylogenetic trees.
  
We will attempt to provide all necessary information to use BIOCrunch effectively here in this website.
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BIOcrunch runs a 64-bit Linux system and is only accessible for users with accounts.  
  
== Basics ==
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== How to prepare and run a job ==
  
How to get an account ?
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* What are my [[responsibilities]]?
Some guidelines
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* [[Get Account|How to get an account]]
What are my responsibilities ?
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* [[PrepareJob|Preparing the job on your local machine]]
How to login ?
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* [[File Transfers|Copying job files to the cluster]]
How to do file transfers [[File Transfers]]?
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* [[Login|Log in to the cluster]]
What about Disk Storage ?
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* [[Qsub|Starting the job]]
How to observe the Cluster Status
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* Check the status of your job under [http://cluster.zsm-intra.net/ganglia/ Cluster Status]
 
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* [[File Transfers|Get the results]]
== Submitting jobs ==
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How do I open an interactive session on a compute node?
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What is qsub ?
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What is qrsh?
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How to run single jobs ?
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How to run parallel jobs ?
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How to run many, many jobs at once: use array jobs
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Requesing memory for a job with large RAM requirements
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== Executables and Libraries ==
 
== Executables and Libraries ==
 
Can you install programs for me ?
 
Can you install programs for me ?
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How to check if my program is using threads
 
How to check if my program is using threads
 
Please Contact administrator@zsm.mwn.de for problems,requests,etc...
 
Please Contact administrator@zsm.mwn.de for problems,requests,etc...
 
== Older News ==
 
  
 
== Best practices ==
 
== Best practices ==
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Gerhard W. Recher / Matthias Müller
 
Gerhard W. Recher / Matthias Müller
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__NOTOC__

Latest revision as of 15:46, 24 May 2017

[edit] Welcome to the HPC Cluster BioCrunch Wiki

Biochrunch.PNG

[edit] Introduction

The BioCrunch cluster is a centrally administered cluster consisting of several nodes hosted by the Zoologische Staatssammlung in Munich, Germany.

The cluster hosts several programms that are dedicated to the inference of phylogenetic trees.

BIOcrunch runs a 64-bit Linux system and is only accessible for users with accounts.

[edit] How to prepare and run a job


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