Main Page

From BIOcrunch
(Difference between revisions)
Jump to: navigation, search
 
(20 intermediate revisions by 3 users not shown)
Line 1: Line 1:
Welcome to the High Performance Computing Cluster BIOcrunch Wiki at the ZSM.
+
= Welcome to the HPC Cluster ''BioCrunch'' Wiki =
  
[[Datei:biochrunch.PNG|600px]]
+
[[File:biochrunch.PNG]]
  
 
== Introduction ==
 
== Introduction ==
  
The BIOCrunch cluster at ZSM is a centrally administered cluster containing several nodes hosted by the Zoologische Staatssammlung in Munich, Germany.
+
The BioCrunch cluster is a centrally administered cluster consisting of several nodes hosted by the [http://www.zsm.mwn.de Zoologische Staatssammlung] in Munich, Germany.
  
The cluster runs 64-bit Linux and is accessible at cluster.zsm-intra.net to users with accounts. [[SoftwareStatus|Here]] you find the list of installed software.
+
The cluster [[BIOcrunch:About|hosts several programms ]] that are dedicated to the inference of phylogenetic trees.  
  
Send emails to administrator@zsm.mwn.de if you have a technical question or problem that cannot be addressed by the documentation below.
+
BIOcrunch runs a 64-bit Linux system and is only accessible for users with accounts.  
  
'''There is a step-by-step [[Tutorial]] that describes how run analyses on the cluster.'''
+
== How to prepare and run a job ==
  
== Basics ==
 
 
* How to [[Get Account|get an account]] ?
 
 
* What are my [[responsibilities]]?
 
* What are my [[responsibilities]]?
* How to [[login]]?
+
* [[Get Account|How to get an account]]
* How to do file transfers [[File Transfers]]?
+
* [[PrepareJob|Preparing the job on your local machine]]
* How to observe the [http://cluster.zsm-intra.net/ganglia/ Cluster Status]
+
* [[File Transfers|Copying job files to the cluster]]
 
+
* [[Login|Log in to the cluster]]
== Submitting jobs ==
+
* [[Qsub|Starting the job]]
 
+
* Check the status of your job under [http://cluster.zsm-intra.net/ganglia/ Cluster Status]
* [[PrepareJob|Prepare job on local machine]]
+
* [[File Transfers|Get the results]]
* [[Qsub|Starting job on the cluster with qsub]]
+
  
 
<!--
 
<!--
Line 67: Line 63:
 
Gerhard W. Recher / Matthias Müller
 
Gerhard W. Recher / Matthias Müller
 
-->
 
-->
 +
__NOTOC__

Latest revision as of 15:46, 24 May 2017

[edit] Welcome to the HPC Cluster BioCrunch Wiki

Biochrunch.PNG

[edit] Introduction

The BioCrunch cluster is a centrally administered cluster consisting of several nodes hosted by the Zoologische Staatssammlung in Munich, Germany.

The cluster hosts several programms that are dedicated to the inference of phylogenetic trees.

BIOcrunch runs a 64-bit Linux system and is only accessible for users with accounts.

[edit] How to prepare and run a job


Personal tools
Namespaces

Variants
Actions
Navigation
Tools