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== Submitting jobs == | == Submitting jobs == | ||
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* What is qsub ? [[Qsub]] | * What is qsub ? [[Qsub]] | ||
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* How to run single jobs ? | * How to run single jobs ? | ||
* How to run parallel jobs ? | * How to run parallel jobs ? | ||
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== Executables and Libraries == | == Executables and Libraries == | ||
Revision as of 17:31, 13 July 2014
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Welcome to the High Performance Computing Cluster BIOcrunch Wiki at ZSM Munich.
Contents |
News
The cluster was upgraded in June 2013. It is up and running at cluster.zsm-intra.net. See the ClusterUpgradeEmail
Introduction
The BIOCrunch cluster at ZSM is a centrally administered cluster composed of compute nodes owned by ZSM. The cluster runs 64-bit linux and is accessible at cluster.zsm-intra.net to users with accounts. There is an BIOCrunch Advisory Committee that oversees the cluster. Day-to-day management of the cluster falls to Gerhard Recher. Send emails to administrator@zsm.mwn.de if you have a technical question or problem that cannot be addressed by the documentation below. If you are new to the cluster, please check scheduler and resource manager tutorials and go through FAQs. Thanks.
FAQs
We will attempt to provide all necessary information to use BIOCrunch effectively here in this website.
Basics
- How to get an account ?
- Some guidelines
- What are my responsibilities ?
- How to login ?
- How to do file transfers File Transfers?
- What about Disk Storage ?
- How to observe the Cluster Status [1]
Submitting jobs
- Prepare job on local machine PrepareJob
- What is qsub ? Qsub
- How to run single jobs ?
- How to run parallel jobs ?
Executables and Libraries
Can you install programs for me ? Where is python 2.5 ? Information on Libraries and Interfaces installed on the cluster.
Other
BIOCrunchC GPU computing How to check if my program is using threads Please Contact administrator@zsm.mwn.de for problems,requests,etc...
Older News
Best practices
Our aim is to publish best practices and experiences about research and cluster computing. What is a "project"? Software development Data collection Data processing
Technical/administration information
This section is for documenting the technical and administration side of BIOCrunch. BIOCrunch's blueprint? How to add a user? How to add a node? How to add a file server? rocks sync config hangs! Configuration of master node Configuration of gridengine How to install different compilers? Syslog Notes Monitoring Issues - to be resolved eventually Unpacking Nodes Software tips, tricks, howtos Hardware tips, tricks, howtos Testing ground
Gerhard W. Recher / Matthias Müller
