PrepareJob

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Always prepare your jobs fir on your local machine and follow for each job some guidelines.

name your job file and your data files in a consistent way job file: myjobfile.sh User: gerhard email: gerhard@recher.de

you may use this as a template for Beast simply change all occurrences of "myjobfile" to your actual project name. also change User and email to your settings.

example:

#!/bin/csh
#
# Which account to be charged cpu time
#$ -A gerhard
#
#
# If you want to make it queue now, get rid of the -a option by adding ## before $
# If you want to make it queue later, use this format [[CC]yy]MMDDhhmm[.SS]
#$ -a 201407300600
#
#
# Send mail to these users
#$ -M gerhard@recher.de
#
# Mail at beginning/end/on suspension
#$ -m bes
#
# Export these environmental variables
#$ -v PVM_ROOT,LD_LIBRARY_PATH=/share/apps/beaglenew
#
# The job is located in the current
# working directory.
#$ -cwd
#$ -o myjobfile.out
#$ -e myjobfile.err
#
env >./xenv
/share/apps/beast180/bin/beast -beagle -beagle_CPU -beagle_instances $NSLOTS -overwrite ./myjobfile.xml > ./myjobfile.out
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