PrepareJob

Always prepare your jobs fir on your local machine and follow for each job some guidelines.

name your job file and your data files in a consistent way job file: myjobfile.sh User: gerhard email: gerhard@recher.de

you may use this as a template for Beast simply change all occurrences of "myjobfile" to your actual project name. also change User and email to your settings.

example:

1. #!/bin/csh
2. #
3. # Which account to be charged cpu time
4. #$ -A gerhard
5. #
6. #
7. # If you want to make it queue now, get rid of the -a option by adding ## before $
8. # If you want to make it queue later, use this format [[CC]yy]MMDDhhmm[.SS]
9. ##$ -a 201407300600
10. #
11. #
12. # Send mail to these users
13. #$ -M gerhard@recher.de
14. #
15. # Mail at beginning/end/on suspension
16. #$ -m bes
17. #
18. # Export these environmental variables
19. #$ -v PVM_ROOT,LD_LIBRARY_PATH=/share/apps/beaglenew
20. #
21. # The job is located in the current
22. # working directory.
23. #$ -cwd
24. #$ -o myjobfile.out
25. #$ -e myjobfile.err
26. #
27. env >./xenv
28. /share/apps/beast180/bin/beast -beagle -beagle_CPU -beagle_instances $NSLOTS -overwrite ./myjobfile.xml > ./myjobfile.out